FUMA GWAS: Functional Mapping and Annotation of Genome-Wide Association Studies
FUMA is a platform that can be used to annotate, prioritize, visualize and interpret GWAS results. The&n...st of gene IDs (as identified by SNP2GENE or as provided manually) and annotates genes in biological context&...1820 days ago
GffCompare: Program for processing GTF/GFF files
The program gffcompare can be used to compare, merge, annotate and estimate accuracy of one or more GFF files (the “query” files), when compared with a reference annotation (also provided as GFF).1782 days ago
dnaPipeTE: a pipeline designed to find, annotate and quantify Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NG...1748 days ago
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
...h aims to automatically filter pair-end raw data (fastq files), assemble genome, search for mitogenome sequences from the genome assembly result, annotate mitogenome (genbank file as r...1583 days ago
SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.
...The collinearity file generated as an output by McScanX for the same input query. Optional track file in bedgraph format to annotate the generated charts. SynV...1455 days ago
maftools : Summarize, Analyze and Visualize MAF Files
...data consisting of somatic variants are stored in the form of Mutation Annotation Format. This package attempts to summarize, analyze, annotate and visualize MAF files in an...1249 days ago
Genome assembly training tutorial at Galaxy !
In this tutorial we assemble and annotate the genome of E. coli strain C-1. This strain is routinely used in experimental evolution studies involving bacteriophages. For instance, now...1245 days ago
270 days ago
WAAFLE: a Workflow to Annotate Assemblies and Find LGT Events.
...genomes, identifying LGTs from community metagenomes remains an open problem. To address this, we developed WAAFLE: a Workflow to Annotate Assemblies and Find...975 days ago
890 days ago