Tools to detect synteny blocks regions among multiple genomes
...and novel structural features of study species by comparing to a well annotated reference sequence, thus enab...n them. GSV also allows users to upload annotation files to visualize annotated regions in addition to synten...2616 days ago
List of gene ontology software and tools
...logy (GO) disclaimer icon associated with those genes. It provides several tools to view/access the GO term hierarchy, full listing of GO terms annotated with the genes associated wit...3716 days ago
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Genome Assembly Tools and Software - PART2 !!
...for any SpeciesThe est2assembly platform is the only platform for standardising transcriptome projects: go from raw trace files to an annotated GBrowse interface driven by t...2691 days ago
3953 days ago
Next generation sequencing in R or bioconductor environment
...a Rsamtools) and associating them with genomic feature ranges, such as exons or genes. This way one can quantify the number of reads aligning to annotated genomic regions. The package...3630 days ago
Scientists map 17,294 proteins produced in human body
...e antibody-based Human Protein Atlas programme http://www.humanproteomemap.org/ -Proteogenomic analysis by identifying translated proteins from annotated pseudogenes, non-coding RNAs...3635 days ago
3252 days ago
Protein function annotation and machine learning - UPMC - Paris, France
...obabilistic models coding for about 10^7 evolutionary protein pathways. Such models will be used to search for specific domains in genomes to be annotated. Our previous methodology nee...3570 days ago
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slacTree: SVG Large Annotated Circular Tree drawing
A simple, extensible, Perl script for producing figures of large phylogenetic trees. While there are many other tree drawing programs, slacTree was originally written in 2009 to fill a need for producing publication quality figures of circular trees with more than 1000 taxa with custom annotat...Tags: slacTree, SVG, Large, Annotated, Circular, Tree, drawing
2504 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview of genome-wide synteny in PDF. Each of these programs are included with the Synima package, and a pipeline for the...Tags: Synima, Synteny, imaging, tool, annotated, genome, assemblies
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