Results for "assemble"
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shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
...des at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Mega...1228 days ago
RNA-Seq De novo Assembly Using Trinity
...om paralogous genes. Briefly, the process works like so: Inchworm assembles the RNA-seq data into the un.... Build Trinity by typing 'make' in the base installation directory. Assemble RNA-Seq data like so: Trini...2974 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as...MHAP Generate corrected sequence consensus Trim corrected sequences Assemble trimmed corrected sequences...2923 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
...pite this, some old problems have become even more difficult, de novo assembly being on top of this list. Despite efforts to design tools able to assemble, de novo, an organism sequenc...2703 days ago
- ...cal sense, 'overlap-consensus-layout' method would have been enough to assemble large genomes from Sanger rea...real genomes often have long repetitive regions, and they are hard to assemble using overlap-consensus-layou...
2702 days ago
- This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained b...
2629 days ago
- This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained b...
2618 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scien...ABOG is an extension of the Celera Assembler software that was originally...ny software programs called genome assemblers. These programs exist to ov...entific goals. It was the first to assemble the genome of a multicellular...2556 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
...or Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced w...2548 days ago
Omega2: metagenome assembly pipeline
...using mate-pair information. In comparison with three de Bruijn graph assemblers (SOAPdenovo, IDBA-UD and Me...a fraction of the computing time of existing overlap-layout-consensus assemblers. This indicates Omega can m...2500 days ago
