QuorUM: An Error Corrector for Illumina Reads
We produce trimmed and error-corrected reads that result in assemblies with longer contigs and fewer errors. We compared QuorUM against several published error correctors and found that...1565 days ago
1563 days ago
BlobToolKit: A toolkit for genome assembly QC
Filtering raw genomic datasets is essential to avoid chimeric assemblies and to increase the validity of seque...preliminary or published genomic datasets even for highly fragmented assemblies. BlobTools2 is a comman...1549 days ago
Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm
...ssembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a single run and polish the assemblies of genomes of any size. Descr...1525 days ago
HASLR: a hybrid assembler which uses both second and third generation sequencing reads
...d generation sequencing reads to efficiently generate accurate genome assemblies. Our experiments show that HA...y the fastest assembler but also the one with the lowest number of misassemblies on all the samples compared t...1476 days ago
NucDiff: In-depth characterization and annotation of differences between two sets of DNA sequences
...ery fragmented genomes, structural rearrangements and various local differences. These features make NucDiff to be perfectly suitable to compare assemblies with each other or with avail...1475 days ago
Synteny and Rearrangement Identifier (SyRI)
SyRI is a comprehensive tool for predicting genomic differences between related genomes using whole-genome assemblies (WGA). The assemblies are aligned using whole-genome alignment tools, and thes...1475 days ago
Supernova: generates phased, whole-genome de novo assemblies from a Chromium-prepared library.
Supernova generates phased, whole-genome de novo assemblies from a Chromium-prepared library. Please see Achieving Success with De Novo Assembly and System Req...1449 days ago
CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes
The pipeline can use information from scaffolded assemblies (for example from HiC or 10X Genomics), or even fr...methods. For smaller vertebrate genomes (~1 Gbp) chromosome scale assemblies can be achieved within 12h on...1166 days ago
1430 days ago