Download the genome from NCBI using bash script/command
...cd genome # Look for genome assembly summary and extract the URL...nlm.nih.gov/genomes/refseq/fungi/assembly_summary.txt' | awk '{FS="\t"}...nih.gov/genomes/genbank/bacteria/assembly_summary.txt' | awk '{FS="\t"}....nih.gov/genomes/refseq/protozoa/assembly_summary.txt' | awk '{FS="\t"}...2546 days ago
Download the gff files from NCBI using bash script/command
...genome_gff # Look for genome assembly summary and extract the URL...nlm.nih.gov/genomes/refseq/fungi/assembly_summary.txt' | awk '{FS="\t"}...nih.gov/genomes/genbank/bacteria/assembly_summary.txt' | awk '{FS="\t"}....nih.gov/genomes/refseq/protozoa/assembly_summary.txt' | awk '{FS="\t"}...2537 days ago
Create genome scaffolding with Perl
...rbose => 0}); } } @ARGV = @pslFiles; if(!$projOpts->{"query"}){ pod2usage({-exitVal => 1, -message => "Error: No query assembly file provided",...2322 days ago
2137 days ago
Resume the MIRA assembler run !
......] Options: -c / --cwd= directory Change working directory -r / --resume Resume an interupted assembly -h / --help...1748 days ago
2113 days ago
2089 days ago
Installing pb-assembly on Linux !
...rayan@hmem00 ~]$ conda install -c bioconda pb-assembly Fetching package metadata .....issing in current linux-64 channels: - pb-assembly -> genomicconsensus -> python...p h470a237_0 conda-forge pb-assembly 0.0.1...2048 days ago
2048 days ago
Setting up falconUnzip conda environments for genome assembly !
...d / updated specs: - pb-assembly The following packages w...18 KB conda-forge pb-assembly-0.0.2 | py...conda-forge pb-assembly: 0.0.2-py27_0...################# | 100% pb-assembly-0.0.2 | 4 KB | ######...2004 days ago