Results for "assignment"
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...become an important task in the post-genomic era. Various genomic events, such as duplication and horizontal gene transfer, can cause erroneous assignment of orthology relations. In cl...2377 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...tate a typical-sized bacterial genome within 10 minutes, with rich information such as pseudogenes, translation exceptions, and orthologous gene assignment between given reference genom...2377 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. B...cDonald NJ, Parks DH, and Beiko RG. Rapid identification of taxonomic assignments. Accepted to Nucleic Ac...2364 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
...t take into account repeats. In this evaluation framework, repeats are taken into account. The new evaluation framework considers the optimal assignment of contigs in the output scaf...2250 days ago
MITOS: improved de novo metazoan mitochondrial genome annotation
...on of gene name and gene boundary designation, anticodon labelling of tRNAs, and provides the means for the assessment of the validity of a gene assignment.2031 days ago
- KOALA (KEGG Orthology And Links Annotation) is KEGG's internal annotation tool for K number assignment of KEGG GENES using SSEARCH computation. BlastKOALA and GhostKOALA assig...
1984 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
...assembly. Dotplots are optionally produced for all flagged contig matches, juxtaposed with read-coverage, to help the user determine the proper assignment of any remaining ambiguous co...1979 days ago
CLARK: Fast, accurate and versatile sequence classification system
...ion problems (see the article for details), namely (1) the taxonomic classification of metagenomic reads to known bacterial genomes, and (2) the assignment of BAC clones and transcript...1554 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
...genomic analysis workflows including data pre-processing, metagenome assembly, taxonomic and functional classification, genome binning, and gene assignment. We aim to deliver the analyt...1500 days ago
