Computer simulation of genetic mechanism !!
...ects/episimsimulator/files/ EvolSimulator A simulation test bed for hypotheses of genome evol...ForwSim The program given below is based on the algorithm described in Padhukasahasram et al. 200...2984 days ago
2169 days ago
Public Databases for Bioinformatics !
...p;https://www.encodeproject.org/files/ENCFF446WOD/@@download/ENCFF446WOD.bed.gz, https://www.encodepr...anford.edu/kundaje/akundaje/release/blacklists/hg38-human/hg38.blacklist.bed.gz. The human genome version...1148 days ago
3018 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...genomics. http://egglib.sourceforge.net/EvolSimulator A simulation test bed for hypotheses of genome evol...rch.shtmlForwSim The program given below is based on the algorithm described in Padhukasahasram et al. 200...3746 days ago
Commercial and public next-gen-seq (NGS) software
...on Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data. (C++) SISSRs - Site Identification from Short Sequence Reads. BED file input. Raja Jothi @ NIH....3528 days ago
ArrayGen Next Generation Genome Browser Coming Soon !!!
...cing data analysis. It is platform independent and much simpler to use. The main features are, it supports many standard file formats such as GFF, BED, GTF, FASTA, VCF, BAM and it...3085 days ago
3751 days ago
2084 days ago
2028 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we present a significant update to one of the tools in this domain called Enrichr. Enrichr currently contains a large collection of diverse gene set libraries available for analysis and down...Tags: Bioinformatics, Analysis, Enrichment, Enrichr, Web, Server, GO, Pathway, Genes, BED, Ontologies, Drug, Cell, Disease
2574 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
BEDOPS v2.4.26 is a suite of tools to address common questions raised in genomic studies — mostly with regard to overlap and proximity relationships between data sets. It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale genomic...Tags: BEDOPS, high-performance, genomic, feature, operations, NGS, BED
2528 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...e technologies to generate variant calls and regions for use in benchmarking and validating variant calling pipelines. Currently, benchmark VCF and BED files for small variants are...1569 days ago
2146 days ago