Computer simulation of genetic mechanism !!
...ects/episimsimulator/files/ EvolSimulator A simulation test bed for hypotheses of genome evol...ForwSim The program given below is based on the algorithm described in Padhukasahasram et al. 200...2968 days ago
2153 days ago
Public Databases for Bioinformatics !
...p;https://www.encodeproject.org/files/ENCFF446WOD/@@download/ENCFF446WOD.bed.gz, https://www.encodepr...anford.edu/kundaje/akundaje/release/blacklists/hg38-human/hg38.blacklist.bed.gz. The human genome version...1132 days ago
3002 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...genomics. http://egglib.sourceforge.net/EvolSimulator A simulation test bed for hypotheses of genome evol...rch.shtmlForwSim The program given below is based on the algorithm described in Padhukasahasram et al. 200...3730 days ago
Commercial and public next-gen-seq (NGS) software
...on Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data. (C++) SISSRs - Site Identification from Short Sequence Reads. BED file input. Raja Jothi @ NIH....3512 days ago
ArrayGen Next Generation Genome Browser Coming Soon !!!
...cing data analysis. It is platform independent and much simpler to use. The main features are, it supports many standard file formats such as GFF, BED, GTF, FASTA, VCF, BAM and it...3069 days ago
3735 days ago
2068 days ago
2012 days ago
Tags: Genome Browser, Organism, Plant, Animal, Bacteria, fungi, Genome Sequence, DNA, Sequencing, Annotation, SNP, gff, gtf, gff3, vcf, bed
3908 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...e technologies to generate variant calls and regions for use in benchmarking and validating variant calling pipelines. Currently, benchmark VCF and BED files for small variants are...1553 days ago
2131 days ago