Results for "benchmarking and designing tools"
Bookmarks
Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingTools3001 days ago
- Spines Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group...; Papaya, an all-purpose alignment tool for less diverged sequences; and SLAP, a context-sensitive local...
3000 days ago
- NCBI Remap. This tool is conceptually similar to liftOver in that in manage...e API for NCBI Remap. More at http://www.ncbi.nlm.nih.gov/genome/tools/remap API http://www.ncbi.nlm.nih.gov/genome/tools/remap/docs/api
2998 days ago
- HiCdat: a fast and easy-to-use Hi-C data analysis tool HiCdat is easy-to-use and provides solutions starting from aligned re...f chromosomes, their correlation to genomic and epige...ting workflows or combined with alternative tools. More at http://bmcbioinform...
2997 days ago
UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for standalone command-line use on various supported Linux and UNIX platforms. To determine...ents. The UCSC Genome Browser and Blat software are free for ac...e.ucsc.edu/license/. The Blat and In-Silico PCR software may be c...2991 days ago
- Machine Learning in Python Simple and efficient tools for data mining and data analysis Accessible to everybody, and reusable in various contexts Built on NumPy, SciPy, and matplotlib Open source, commercially usable - BSD license More at http://scikit-learn.org/stable/index.html
2980 days ago
- GA4GH Data Working Group Led by David Haussler (UCSC) and Richard Durbin (Sanger Institute), the Dat...ngs together the leading Genome Institutes and Centers with IT industry leaders to create global standards and tools for the secure, privacy respe...
2959 days ago
- Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are de...For developers, the source code, building instructions and implementation/development reso...
2920 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using...tomatically break incorrect scaffolds and flag other errors in an assem...inspection. It reports mis-assemblies and other...bly. http://www.sanger.ac.uk/science/tools/reapr2943 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is impor...d first into more advanced analysis tools such as HOMER. Setting u...r computing environment Retrieving and stori...Seq De novo transcript discovery and differential analysis with Cuff...2923 days ago
