Results for "benchmarking and designing tools"
Bookmarks
SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next...; Updated to use samtools 1.1 and bcftools 1.2. ...bsp; Updated usage for bcftools.AboutSAMtools is a popular op...es an introduction to SAMtools, and is geared towards those new to...2866 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers) at distal genomic...With the increasing diversity and complexity of genomic informa...tive and easy-to-use software tools. Mo...ks with user-provided private and publicly available functional g...
2862 days ago
- The greengenes web application provides access to the 2011 version of the greengenes 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading. The data and tools presented by greengenes can a...
2860 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of m...tiple sequence alignment. Faster and more accurate than CLUSTALW....PARSE >OTU clustering for 16S and other marker genes. Highly ac...pare two multiple alignments for benchmark...iple alignment benchmarks in a standar...2854 days ago
- Microbiome analysis using a single application MEGAN6 is a compr...biome data. All the interactive tools you need in one application...word clouds, Voronoi tree maps and many other charts PCoA, clustering and netwo...ffers a large range of analysis tools, and is under active development....
2834 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for discovering and genotyping structural variations using se...ndividuals.Genome STRiP looks both across and withi...iations in sequencing depth, read lengths and mixtures of paired and single-e...
2791 days ago
- This tutorial includes resources for learning more about PacBio data and bioinformatics analysis, and includes content suitable for bo...ks to training modules (webinars and PowerPoint presentations) to...alysis Barcoding Data Analysis Tools Minor Variants and Phasing Analysis...
2620 days ago
- Most variant calling pipelines result in files containing large quantities of variant...lar format for this data. The format of these files and their...wise problematic sites. The R package vcfR provides tools to facilitate this filtering...
2809 days ago
- Collections of few handy tools for bioinformatician http://molbiol-tools.ca/Convert.htm
2799 days ago
- ...rk flow with a minimal set of tools that would reach state-of-t...ta into unsupervised training and subsequently generates ab ini...requires supervised training and uses information from RNA-Seq reads...USTUS provided motivation for designing a new combined tool for a...
1944 days ago
