Results for "benchmarking and designing tools"
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Bioinformatics Web Application Development with Perl
...piecemeal, thanks to the new tools and techniques of modern Pe...Perl has dozens of frameworks and toolk..., such as CSS 3, web sockets, and HTTP 2. Where Catalyst embrace...rom full-blown web frameworks and content management systems to A...for web services, development tools, testing systems, and interfa...2315 days ago
List of visualization tools for network biology
...ork as a whole at the species and/or population level. Few tools published in BMC are listed...ollection of network analysis tools with the emphasis on efficien...ction techniques, data models and domain-specific visualizations...://tinyurl.com/yEdGraph/ Web tools for network analysis APID&nb...2282 days ago
List of visualization tools for genome alignments
...enome alignment visualization tools, which could be useful for analysis and interpretation of result...o display a sequence assembly and associated metadata http://w...r-end short reads http://omictools.com/mapview-s1367.html Multi...bsp; Software for annotating and visualizing sequenced human gen...2278 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as...sh; edit file alias name 'command' — create an alias... — compresses file and renames it to file.gz gzip -d f...2274 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their im...g/ RepeatRunner http://www.yandell-lab.org/repeat_runner/inde...ncbi.nlm.nih.gov/CBBresearch/Landsman/TSDfinder/ Tu Lab TE tools http://jaketu.biochem.vt.edu/...2268 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic m...is relatively common in prokaryotes and single-celled eukaryotes, but...host nucleus, integrate into the genome, and in mo...etic incompatibility with the host genome and m...844 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be use...Python to build productivity tools, games, and desktop apps, so there are pl...Allen B. Downey, Jeff Elkner and Chris Meyers (2.4) Think Pytho...Beazley Python Data Science Handbook - Jake VanderPlas (HTM...2249 days ago
Tools to Predict the Impact of Missense Variants !
...studies for exploring complex and Mendelian diseases. A large number of in silico tools have been employed for the...he datasets used for training and for evaluation of these tools, which may lead to overly opt...values based on an alignment and a model of neutral evolution&rd...2197 days ago
Protein-Protein Interaction Sites Predictions !
The study of Protein–Protein Interactions (PPIs) has a cr...artners of a specific protein and the amino acid residues parti...in turn facilitate the understanding of many biological and cli...p; Following are the list of tools com... cons-PPISP, PINUP, and Promate ODA Identificati...2196 days ago
Ligand Docking Tools and Software !
Ligand docking referred to cases where small molecule (“ligand”) is being docked into...east for academic institutes) and/or popular docking tools. AutoDock Stochastic (GA) Flexible ligand and partially flexible target Ar...k Stochastic (GA)Flexible ligand and f...2196 days ago
