Results for "big cat"
Bio-Scripts
#USAGE: CI_normal(matrix[,c(x:y)],97.5) - multiple column from a normal distribution #USAGE: CI_tdist(matrix[,c(x:y)],97.5) - multiple column from a t distribution...2870 days ago
Palindrome Simulation commands !
(base) ➜ palindromeAssemblySim more allCommands 3315 mutate.sh in= mutant15CH10...CH101.fasta out=mutant153CH101.fasta id=97 3317 history > allCommands 3318 cat ch101_read33155_template_pass...1734 days ago
Download the genome from NCBI using bash script/command
#!/bin/bash # Download the genome from NCBI using command # Create a Directory...# take action on each file. $f store current file name wget --input $f #cat $f cd .. done #Referen...2531 days ago
Unzip all the genome file and remove all fasta header except first one
#!/bin/bash gzip -d *.gz FILES=$(pwd)/* for f in $FILES do echo "Processi...'1!{/^\>/d;}' $f > $f.fa else echo "this file is not right file" fi #cat $f done2530 days ago
Download the gff files from NCBI using bash script/command
#!/bin/bash # Download the genome from NCBI using command # Create a Directory...t file name head -n 4 $f > $f.head wget --input $f.head gunzip *.gz #cat $f cd .. done2522 days ago
Loop over with all files in a directory in bash
#!/bin/bash FILES=/media/ComparativeGenomics/ncbi-genomes-2017-11-13/* ref=/media/...current file name mkdir $ff $path/SatsumaSynteny -q $ref -t $f -o $ff #cat $f fi done...2330 days ago
- # bash cat INFILE.fastq | paste - - - - |cut -f 1, 2| sed 's/@/>/'g | tr -s "/t" "/n" > OUTFILE.fasta #awk cat infile.fq | awk '{if(NR%4==1)...
849 days ago
- ➜ trinityrnaseq-Trinity-v2.6.6 gi...ne converting input files.CMD: cat left.fa right.fa > both.fa C...-------- -- (building a k-mer catalog from reads) -- ---------...y, July 9, 2018: 10:51:26 CMD: cat /home/urbe/Tools/trinityrnase...ut_dir/Trinity.fasta.tmp -relocating /home/urbe/Tools/trinityrn...
2126 days ago
Generate simulated polyploid genome !
#Generate 3% divergence msbar -point 4 -count 16558 toy.fasta > toyheterozygous3percent.fasta #Cat both files cat toy.fasta toymutated3percent...2052 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail ----...ta ........... Solving package specifications: PackageNotFoundError................ Solving package specifications: . Package plan for in...ase.py fc_run.py fc-cat fc_get...2033 days ago
