Results for "binary files"
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MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is use...and lower number of contigs. More at https://sourceforge.net/projects/sb2nhri/files/MyPro/2712 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic...ge is a perl based wrapper/tool that can accept any number of sequence (FASTA) files containing assembled contigs...2708 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alig...llation and version management. The installation does not create or modify any files outside the progressiveCactus...
2679 days ago
- PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The assembler reads two files in FASTQ format with quality...
2673 days ago
- BioDownloader is a program for downloading and/or updating files from ftp/http servers. The pro...deal with bioinformatics data files and servers: optimized to...retrieval of only the required files (file masks, ls-lR parsing, r...It can post-process downloaded files, including archive extraction...
2640 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Ve...atures, the newly implemented methods allow for: (i) analyses on multiple data files; (ii) haplotype phasing; (iii...2659 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer...ize, analyze, annotate and visualize MAF files in an efficient manner either..., visualization and summarization of MAF files from large-scale cohort based...
2649 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circula...raw, unassembled sequence data. BRIG also accepts SAM-formatted read-mapping files enabling genomic regions pres...
2649 days ago
- Collectively, the bedtools utilities are a swiss...d shuffle genomic intervals from multiple files in widely-used genomic file f...simple task (e.g., intersect two interval files), quite sophisticated analyse...
2641 days ago
splitbam: splits a BAM by chromosomes
splitbam splits a BAM by chromosomes. Using the reference sequence dictionary (*.dict), it also creates some empty BAM files if no sam record was found fo...2637 days ago
