2883 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short seque...tasets. The command-line Perl script and additional files van be downloaded below. The...for manipulating DNA sequence assemblies using CAF files, a comprehensive representati...2700 days ago
Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subroutine parameters. $a$b...y to open the file. Command Line Args ARGV Filehandle iterates over files from command line (see also&n...2658 days ago
Awesome perl frameworks, libraries and software - PART 1
...l module to create Excel XLSX files. plainblack/webgui - A f...outine to sync folder of text files with your notes on Simplenote...riandfoy/Learning-Perl-Sample-Files - Extra files for use wi...;- Perl module to write Excel binary files FormFu/HTML-FormFu&nb...2503 days ago
2503 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from R...ion transcript prediction using gene k-mers profiles of the RNA-seq paired-end rea...Software (C) https://sourceforge.net/projects/ksnp/files/ NGS-MC Phylogeny of specie...2385 days ago
2365 days ago
Converting BLAST output into CSV
Suppose we wanted to do something with all this BLAST output. Generally, t...now, just think of it as a way to get ahold of a particular set of files. In this case, we’ve placed the files in /root/ngs-scripts/, and yo...2351 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of t...ame interface to huge relational databases and flat files alike through its DBD extensi...putting one or more .cgi or .pl files in a special directory and ho...2336 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple gen...erence, or splitting the reads into multiple output files, one per reference. BBSplit c..._%.fq outu=clean.fq int=tThis will produce 3 output files:out_ecoli.fq (ecoli read...2328 days ago