2617 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagenomi...ns, including taxonomic assignments from conserved marker genes or SSU rRNA genes, can...tools reports summary statistics of bins including marker ge...2594 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrat...richments for large-scale functional and annotation datasets ChromHMM facilitates the biologica...2571 days ago
2558 days ago
TARDIS: Toolkit for automated and rapid discovery of structural variants
tardis Toolkit for Automated and Rapid DIscovery of Structural variants Requirements zlib (http://www.zlib.net)mrfast (https://github.com/BilkentCompGen/mrfast)htslib (included as submod...2520 days ago
Genetic-mapper: SVG Genetic Map Drawer
Genetic-mapper is a perl script able to draw publication-ready vectorial genetic maps. Perl script for creating a...p;Abobe Illustrator(R). The input file must be a text file with at least the marker na...2510 days ago
2503 days ago
ONT assembly and Illumina polishing pipeline
This pipeline performs the following steps: Assembly of nanopore reads using Canu. Polish canu contigs using racon (optional). Map a paired-end Illum...2352 days ago
2254 days ago
EWAS: epigenome-wide association study software 2.0
EWAS2.0 can analyze EWAS data and identify the association between epigenetic variations and disease/phenotype. On...lation epigenetic framework” and can perform: (1) epigenome-wide single marker as...2234 days ago