proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
...hrough iterative short read consensus outperforms PacBioToCA/LSC in terms of accuracy and contiguity/sensitivity (http://dx.doi.org/10.1093/bioinformatics/btu392) is easy to install/r...2304 days ago
Mobyle: a new full web bioinformatics framework
...vide a flexible and usable Web environment for defining and running bioinformatics analyses. It embeds simple ye...remote Mobyle servers, thus enabling a federated network of curated bioinformatics portals without the user havi...2302 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named&...2271 days ago
An Introduction to Applied Bioinformatics
IAB is primarily being developed by Greg Caporaso(GitHub/Twitter: @gregcaporaso) in the Caporaso Lab at Northern Arizona University. You can find i...2248 days ago
2248 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
Genome scaffolding is a classical challenging problem in bioinformatics. It refers to joining assembly contigs into chains (called scaffolds). The join between two contigs A and B is cons...2229 days ago
SciLifeLab tutorial for bioinformatics analysis !
...ourses Old courses (2012-2014) Metagenomics Workshop 2015 November - Uppsala2016 November - Uppsala2017 November - Uppsala Introduction to Bioinformatics Using NGS Data 2015 February...2202 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
...lease also checkout the podcast about Scallop (thanks Roman Cheplyaka for the interview). It is available at both the bioinformatics chat and iTunes. &...2181 days ago
MIX: Combining multiple assemblies from NGS data
...s to a path in the extension graph that maximizes the cumulative contig length. The Mix algorithm, approach and results were published in BMC bioinformatics : http://www.biomedcentr...2181 days ago
Jvarkit : Java utilities for Bioinformatics
Collection of Java tool kits for bioinformatics works: Jvarkit : Java utilities for Bioinformatics2150 days ago