CISA: Contig Integrator for Sequence Assembly
...by the state-of-the-art assemblers and the hybrid assemblies merged by existing tools. This tool is implemented in Python and requires MUMmer and BLAST+ to be installed on the local...2695 days ago
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DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...ong with their genome coordinates. Using a scoring function which accounts for the distance between neighboring genes on each DNA molecule and the BLAST E-value score between homolog...2631 days ago
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Genome Annotation Transfer Utility (GATU)
...g a previously-annotated strain of SARS CoV. This saves researchers from tedious manual annotation of these sequences. The program utilizes tBLASTn and BLASTn algorithms to map genes from...2530 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...of DNA. The Basic Local Alignment Search Tool (BLAST) has revolutionized the field...uencing techniques, the utility of traditional BLAST implementations is limited. C...https://webchem.ncbr.muni.cz/Platform/App/CrocoBLAST2473 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
...s a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predictions from BLAST or UBLAST with compositional classifica...2348 days ago