Results for "book your blood test online"
Bio-Scripts
Extract fasta sequences with ids in another file !
#Ids are in test.txt - one ids per line #sequences are in test.fa grep -w -A 2 -f test.txt test.fa --no-group-separator # seqtk seqtk subseq test.fa test.txt #faSomeRecods faSomeRecords in.fa listFile out.fa # seqkit seqkit grep -n -f list.txt sequences.fas > newfile2.fas887 days ago
bash script to extract sequence by ids !
Use a Perl one-liner, grep and seqtk subseq to extract the desired fasta sequences: # Create test i...821 days ago
- #R is a feature rich interpretive programming language originally released in 1995. It is heavily used in the bioi...kspace/bin/Rscript ln -s ~/workspace/bin/R-3.5.1/bin/R ~/workspace/bin/R ## test i...
821 days ago
Install StringTie on ubuntu / Linux !
#StringTie is a software program to perform transcript assembly and quantification of RNAseq data. The binary dist...space/bin/stringtie-1.3.0.Linux_x86_64/stringtie ~/workspace/bin/stringtie # test i...821 days ago
- #GATK is a toolkit developed by the broad institute focused primarily on variant discovery and genotyping. It is o...make symlink ln -s ~/workspace/bin/gatk-4.0.2.1/gatk ~/workspace/bin/gatk # test i...
809 days ago
Commands to Find and replace in file(s0) !
#Use SED sed -i 's/my/your/g' test.txt test2.txt test3.txt #Use FIND and SED find . -name *.txt -exec sed -i 's/my/your/g' {} \; #Use AWK awk '{sub(/{OLD_TERM}/,{NEW_TERM}); print}' {file} awk '{sub(/my/,your); print}' test.txt awk '{gsub(/i/,"a"); print}' test.txt767 days ago
Perl script for chi-squared test !
#!/usr/bin/perl # # chidi.pl # # A script to perform a chi-squared test of the dinucleotide frequencies of two FASTA files # Last updated b...############################################# # Perform chi-squared test...409 days ago
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