2555 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate...s11307.htmlFeatures Mapping position agnostic to alignmen...E-value. Meaningful mapping quality. Va...mbly. Transcriptome mapping through internal construction...2538 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (...ost of the sequencing errors, thus making subsequent use of the data (e.g. for mapping or assembly) easier. Here we...2383 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de no...reads. It takes all-vs-all read self-mappings (typically by minimap)...T) bacterial data sets. Including the mapping step, it takes about 3 minute...d miniasm are ultrafast tools for (i) mapping and (ii) assembly. Designed f...2365 days ago
2363 days ago
2349 days ago
2335 days ago
snakepipes: A toolkit based on snakemake and python for analysis of NGS data
snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data. DNA-mapping* ChIP-seq* RNA-seq* ATAC-s...1816 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
CoNvex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed to...structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then...2216 days ago
MITObim - mitochondrial baiting and iterative mapping
This document contains instructions on how to use the MITObim pipeline described in Hahn et al. 2013. The full article can be found here. Kindly cite the article i...2203 days ago