Results for "bwa"
Top-level pages
Next generation sequencing in R or bioconductor environment
...quickly becoming a universal standard alignment format, and is now supported by a wide variety of alignment tools. Documentation Samtools Website BWA (Burrows-Wheeler Alignment) W...3631 days ago
Commercial and public next-gen-seq (NGS) software
...Written by Ben Langmead and Cole Trapnell. Linux, Windows, and Mac OS X. BWA - Heng Lee's BWT Alignment program - a progression from Maq. BWA is a fast light-weighted tool...3526 days ago
Software packages for next gen sequence analysis
...itten by Ben Langmead and Cole Trapnell. Linux, Windows, and Mac OS X. * BWA - Heng Lee's BWT Alignment program - a progression from Maq. BWA is a fast light-weighted tool...3249 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...fully customizable aligners (Bowtie, Bowtie 2, BWA, GSNAP, Isaac 2, SHRiMP 2, ST...halvade a reference is needed for both GATK and BWA and a SNP (dbSNP!) database i...reads; requires that raw reads are aligned with BWA Input: BAM Output: either V...2916 days ago
Frequent Paired-end reads (PE 2x100) mapping command lines
...-x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r1.sai && bwa aln hs37m.fa r2.fq > r2.sa...&& bwa sampe hs37m r1.sai r2.sai r1.fq r2.fq > r12.bwa.sam bwa bwasw ../index/b...2189 days ago
Frequent parameters for bioinformatics tools !
...” “TOPHRED33” Filtlong --min_length 500 --min_mean_q 85 --min_window_q 65 FastQ Screen --aligner bowtie2' (bwa for PacBio) --subset 1000 (f...1292 days ago
