2353 days ago
Computational Genomics: Applied Comparative Genomics
...genome assembly & comparative genomics, variant identification & analysis, gene expression & regulation, personal genome analysis, and cancer genomics. The grading will be...2344 days ago
Reference-free prediction of rearrangement breakpoint reads
...quencing depth of 100×, it finds ∼88% of the breakpoints correctly with no false-positive reads. Moreover, evaluation on a real prostate cancer dataset shows that the propos...2245 days ago
2164 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
...datasets as part of the Thousand Genomes and WGS500 projects, and is being used in clinical sequencing trials in the Mainstreaming Cancer Genetics programme. ...2014 days ago
1538 days ago
SVEngine: Allele Specific and Haplotype Aware Structural Variants Simulator
...s (see Manual) or specific variant information as specified in VAR files (see Manual) and NEWICK files for specifying clonal phylogenetic trees in cancer. SVEngine outpus alterred co...1396 days ago
maftools : Summarize, Analyze and Visualize MAF Files
With advances in Cancer Genomics, Mutation Annotation Format (MAF) is be...pted and used to store somatic variants detected. The Cancer Genome Atlas Project has sequenced over 30 different cancers with sample size of each can...1224 days ago
865 days ago
865 days ago