Results for "cancer enrichment"
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GeneOverlap: An R package to test and visualize gene overlaps
Overlapping gene lists can reveal biological meanings and may lead to novel hypothes...f histone H3 (H3K4me3) is associated with gene activation and its genome-wide enrichment can be mapped by using ChIP-s...1954 days ago
ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole...variances from the data). By "cohort" we mean samples sequenced with the same enrichment kit with approximately the sa...1569 days ago
netGO: R-Shiny package for network-integrated pathway enrichment analysis
netGO is an R/Shiny package for network-integrated pathway enrichment analysis.netGO provides user-interactive visualization of enrichment analysis results and related networks. Currently, netGO supports analysis for four species (Hu...1542 days ago
- The consequences of alterations in the DNA of cancer cells and subsequent vulnerabilities are not fu...is project aims to assign a dependency to every cancer cell in a patient which could...s. This knowledge is foundational for precision cancer med...
1541 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
2/3/2020: Now published by Bioinformatics. 11/3/2019: V 0.61, Improve graphical visualization (thanks to reviewers). Interactive networks and much more. 5/20/2019:...1430 days ago
SVEngine: Allele Specific and Haplotype Aware Structural Variants Simulator
SVEngine (Structural Variants Engine) SVEngine is a multi-purpose and self-contained simulator for whole genome...les (see Manual) and NEWICK files for specifying clonal phylogenetic trees in cancer. S...1399 days ago
- Clustergrammer is a web-based tool for visualizing high-dimensional data (e.g. a mat...tion of high-dimensional data and has several biology-specific features (e.g. enrichment analysis, see Biology-Sp...
1349 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
The algorithm presented herein, Mining Algorithm for GenetIc Controllers (MAGIC), uses ENCODE ChIP-seq data to look for statistical enrichment of TFs and cofactors in gene...1254 days ago
maftools : Summarize, Analyze and Visualize MAF Files
With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widely accepted and used to store somatic variants detected. The Cancer Genome Atlas Project has sequenced over 30 different cancers wi...1227 days ago
- With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widely accepted and used to store somatic variants detected. The Cancer Genome Atlas Project has sequenced over 30 different cancers wi...
868 days ago
