Results for "chromatin"
Bookmarks
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact with DNA...3717 days ago
- ...t of extensive research, centromere locations in yeast genomes are difficult to infer, and in most species they are still unknown. Recently, the chromatin conformation assay Hi-C has b...
3017 days ago
- ...c locations can interact with each other via chromatin folding and affect gene expre...e tools. Moreover, network representation of chromatin interaction maps enables effe...etwork theory approaches for the analysis of chromatin interaction datasets. To fill...
2881 days ago
ChromHMM: Chromatin state discovery and characterization
...ware for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq dat...dels the presence or absence of each chromatin mark. The resulting model can...duces files with genome-wide maps of chromatin state annotations that can be...2585 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
...l architecture of genomes. Delta takes Hi-C or ChIA-PET contact matrix as input and predicts the topologically associating domains and chromatin loops in the genome. It then...2340 days ago
LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
...d as: Burton JN#, Adey A, Patwardhan RP, Qiu R, Kitzman JO, Shendure J#. Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions. Nature Bio...2195 days ago
GeneOverlap: An R package to test and visualize gene overlaps
...ngs and may lead to novel hypotheses. For example, histone modification is an important cellular mechanism that can pack and re-pack chromatin. By making the chromatin structure more dense or loose...1967 days ago
chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Python package to detect chromatin loops (and other patterns) in Hi-C contact maps. Stable version with pip: pip3 install --user chromosight Stable version with conda: cond...1516 days ago
- Beside visualizing chromatin interaction data, you can also seamlessly browse other omics data such as ChIP-Seq or RNA-Seq for the same genomic region, and gain a complete view of...
1210 days ago
