Results for "cis-regulatory elements"
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IMPUTE2 is a computer program for phasing observed genotypes and imputing missing geno...suggest that you work through these examples and try to understand what the elements of each command are doing. If...2761 days ago
- The eFORGE tool provides a method to view the tissue specific re...is enrichment for overlap of putative functional elements compared to matched backgroun...chment on a per cell type basis, since functional elements are differentially active in...
2760 days ago
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork a new process per each element of...l workers. MCE enhances that model by adding the ability to chunk the next n elements from the input stream to the...2666 days ago
- UpSetR generates static UpSet plots. The UpSet technique vi...ntation of associated data, such as the number of elements in the aggregates and interse...takes up to 6 different lists that contain unique elements, similar to that used in the...
2593 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal...rect and inverted repeats, insertion sequences, transposons and other mobile elements. NCBI has developed an autom...2560 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assem...nal information such as gene ordering and the detection of genes from mobile elements (plasmids and genomic islands...2554 days ago
- Circular plots are useful to represent complicated informations. They are used in 2...xis and numerous categories, and when you want to show relationships between elements. The circos gallery ...
2527 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full l...from the UCSC Genome Browser, gene annotation, annotation of repetitive elements, and progress report were pre...2495 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
Monitoring the progress of DNA molecules through a membrane pore has been postulated as a m...es of the genome and correctly assembles gene cassettes, rRNAs, transposable elements, and other genomic features t...2364 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML langua...associated data. PhyloXML provides elements for commonly used features, s...on events. Using these standardized elements allows interoperability betwe...d the provision of <property> elements by phyloXML, extensibility as...2363 days ago
