MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
...o look for statistical enrichment of TFs and cofactors in gene bodies and flanking r...favourable performance in predicting TFs and cofactors that drive gene changes in 4...t produces meaningful predictions of TFs and cofactors in transcriptomic experiments...1270 days ago
3961 days ago
List of In-silico Binding Site Prediction Tools
...lled sc-PDB. The sc-PDB database provides separated MOL2 files for the ligand, its binding site and the corresponding protein chain(s). Ions and cofactors at the vicinity of the ligand...3758 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
The algorithm presented herein, Mining Algorithm for GenetIc Controllers (MAGIC), uses ENCODE ChIP-seq data to look for statistical enrichment of TFs and cofactors in gene bodies and flanking regions in gene lists without an a priori binary classification of genes as...Tags: MAGIC, tool, predicting, transcription, factors, cofactors, driving, gene, sets, ENCODE, data
1270 days ago