Results for "commands"
Bookmarks
...fferential expression tools:* CuffDiff* EdgeR* DESeq2 Advanced Command Line Tutorial Graphical Output with CummeRbund introduces some basic commands using the cummeRbund package...3666 days ago
Linux command line exercises for NGS data processing
...sier to understand advanced tutorials such as Illumina Amplicons Processing Workflow. In Linux, we use a shell that is a program that takes your commands from the keyboard and gives t...2887 days ago
Fancy Oneliner for Bioinformatics !!
...s that we frequently use in metagenomic analyses. You can click on the following links to browse through different topics. You can copy/paste the commands as they are in your terminal...2872 days ago
Entrez Direct: E-utilities on the UNIX Command Line
...tured XML format. This can eliminate the need for writing custom software to answer ad hoc questions. Queries can move seamlessly between EDirect commands and UNIX utilities or scripts...2768 days ago
- ...ntext menus, automatic layouts, templates, data binding and models, transactional state and undo management, palettes, overviews, event handlers, commands, and an extensible tool syste...
2734 days ago
mojolicious: a next generation web framework for the Perl programming language.
...ing you to easily grow single file prototypes into well-structured MVC web applications. Powerful out of the box with RESTful routes, plugins, commands, Perl-ish templates, content...2318 days ago
SALSA: A tool to scaffold long read assemblies with Hi-C
...LSA algorithm. If you want to use the old version, it can be found in the old_salsa branch. To use the latest version, first run the following commands: cd SALSA make To ru...2164 days ago
- ...bsp;(both tools are part of the tabix package, available for download here). The VCF files can be compressed and indexed using the following commands bgzip my_file.vcftabix -p vc...
2111 days ago
FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
...ython finisherSC.py destinedFolder mummerPath If you are running on server computer and would like to use multiple threads, then the following commands can generate 20 threads to ru...2098 days ago
nQuire: A statistical framework for ploidy estimation using NGS short-read data
nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is observed. Speci...1934 days ago
