2647 days ago
AVID: A Global Alignment Program
...applications of the method, ranging from the comparison of assemblies to alignment of...ments. We have also performed a quantitative comparison of AVID with other popular al...he tools we have developed for the alignment comparisons, as well as the AVID program...2551 days ago
Omega2: metagenome assembly pipeline
...then merged to contigs and scaffolds using mate-pair information. In comparison with three de Bruijn graph as...100-bp dataset and superior performance on a MiSeq 300-bp dataset. In comparison with Celera on the MiSeq data...2504 days ago
2371 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...with 16 CPUs. The total assembly size is 105Mb; the N50 is 1.94Mb. In comparison, the HGAP3produces a 104...ut very noisy (i.e. full of errors) We start with an all against all comparison: minimap -Sw5 -L100 -m0 -t...2364 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...icant accelerations of seeds-based heuristic comparison methods, such as the Blast su...matics. PLAST is a general purpose sequence comparison tool providing the following...), Reduces the processing time of sequences comparisons while providing highest qual...2360 days ago
1396 days ago
Dot, an interactive viewer for genome-genome comparison
...nates file with an index that enables Dot to read in more alignments in certain regions on demand. Dot, an interactive viewer for genome-genome comparison https://dnanexus.github.io/d...2316 days ago
Genome assembly stats plotting
...ach can be applied to a single or multiple assemblies to allow direct comparison of alternate assemblies. Tabular presentation allows direct comparison of exact values between assem...2271 days ago
ALPHA: A Toolkit for Automated Local Phylogenomic Analyses
...lyses and data visualization. It has four distinct modes that are useful for different types of phylogenetic analysis: RAxML, File Converter, MS Comparison, and D-statistic.2249 days ago