OrthoANI: An improved algorithm and software for calculating average nucleotide identity
...ty between two genome sequences. ANI and OrthoANI are comparable algorithms: they share the same species demarcation cut-off at 95~96% and large comparison studies have demonstrated bot...1984 days ago
1688 days ago
1568 days ago
shinyChromosome:a GUI for the interactive creation of non-circular whole genome diagrams
...-genome plot by aligning genome data along all chromosomes of a single genome, go to the Single-genome plot menu. To cretae two-genome plot for comparison of data across two genomes, g...1540 days ago
flexidot: Highly customizable, ambiguity-aware dotplots for visual sequence analyses
...is a cross-platform dotplot suite generating high quality self, pairwise and all-against-all visualizations. To improve dotplot suitability for comparison of consensus and error-prone...1485 days ago
NucDiff: In-depth characterization and annotation of differences between two sets of DNA sequences
...s into genome browser for visualization and further inspection. It was written in Python and uses the NUCmer package from MUMmer[1] for sequence comparison....1474 days ago
1429 days ago
truvari: Structural variant comparison tool for VCFs
Structural variant comparison tool for VCFs Given benchmark and comparsion sets of SVs, calculate the recall, precision, and f-measure. Spiral Genetics Motivation1417 days ago
PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
...s analysis. The "gold standard" for identifying homologs is to use reciprocal best hits (RBHs) which depends on performing a all-vs-all sequence comparison, usually using BLAST, to dete...1374 days ago
1374 days ago