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Results for "conserved"

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• • Jit@jit.aber

  

  Chromonomer: a tool set for repairing and enhancing assembled genomes through integration of genetic maps and conserved synteny

  Chromonomer is a program designed to integrate a genome assembly with a genetic map. Chromonomer tries very hard to identify and remove markers that are out of order in the genetic map, when considered against their local assembly order; and to identify scaffolds that have been incorrectly assemb...

  Tags: Chromonomer, tool, repairing, enhancing, assembled, genomes, integration, genetic, maps, conserved, synteny

  1532 days ago

• • Jit@jit.aber

  

  chromeister: An ultra fast, heuristic approach to detect conserved signals in extremely large pairwise genome comparisons.

  chromeister: An ultra fast, heuristic approach to detect conserved signals in extremely large pairwise genome comparisons. USAGE: -query: sequence A in fasta format -db: sequence B in fasta format -out: output matrix -kmer Integer: k>1 (default 32) Use 32 for chromosomes and genomes and...

  Tags: chromeister, fast, heuristic, approach, detect, conserved, signals, extremely, large, pairwise, genome, comparisons

  815 days ago

• • Neelam Jha@neelam

  

  AnchorWave

  AnchorWave (Anchored Wavefront Alignment) identifies collinear regions via conserved anchors (full-length CDS and full-length exon have been implemented currently) and breaks collinear regions into shorter fragments, i.e., anchor and inter-anchor intervals. By performing sensitive sequence alignm...

  Tags: AnchorWave, Anchored, Wavefront, Alignment, collinear, regions, conserved, anchors, CDS, exon, currently, breaks, collinear, regions, fragments, anchor, inter-anchor, intervals

  795 days ago