Results for "construction"
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Orione – a web-based framework for NGS analysis in microbiology
...sity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metagenomics. However, the construction of computational pipelines th...3587 days ago
- ...tegy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map construction are as follows: For each g...
2658 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequencing, we developed Contig-Layout-Authenticator (CLA). The CLA pipeline c...2570 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...tor and Gotoh, anchored). Overlapping of reads for de novo assembly. Transcriptome mapping through internal construction of a transcriptome from a giv...2537 days ago
- ...read alignment and mapping &mdash mapping DNA-seq and RNA-seq reads Genome assembly &mdash k-mers, De Brujin graph construction and representation, long-read...
2362 days ago
- ...es as well) long reads. The assembly process can be summarized as follows: overlap patch reads overlap (again) scrubbing assembly graph construction and touring optional read co...
2206 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
...nformatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct...ttp://arthropods.eugenes.org/EvidentialGene/Construction refers to the combination of..., and any other, to annotate and score gene constructions. Over-produced constructions...2202 days ago
- ChopStitch is a new method for finding putative exons and constructing splice graphs using an assembled transcriptome and whole genome shotgun sequencing (WGSS) data. Chop...
2146 days ago
Bokeh: An interactive visualization library that targets modern web browsers for presentation
Bokeh is an interactive visualization library that targets modern web browsers for presentation. Its goal is to provide elegant, concise construction of versatile graphics, and to extend...2108 days ago
- ...ollowing steps: Step 1. Run mugsy to get multiple sequence alignment results. Step 2 & 3. Extraction of the Coordinates of Core Blocks, Construction of Synteny Blocks and Generat...
2059 days ago
