Results for "context"
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Janggu - Deep learning for Genomics
Janggu is a python package that facilitates deep learning in the context of genomics. The package is freely available under a GPL-3.0 license. Detail tutorial at https://janggu.readthedocs.io/en/latest/ USE cases https://github.com/wkopp/janggu_usecases1133 days ago
- ...lemented in MetaPred2CS are 2 co-evolutionary methods: in-silico two hybrid (i2h) and mirror tree (MT) methods and 4 genomics context based methods: phylogene...
2614 days ago
- ...ly parallelized program for high-sensitivity, genome-wide synteny; Papaya, an all-purpose alignment tool for less diverged sequences; and SLAP, a context-sensitive local aligner for d...
3002 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
...nd visualise genomic rearrangements. The detection is based on conditional exclusive compression, namely using a FCM (Markov model), of high context order (typically 20). For vis...2924 days ago
- ...ences. It can be used to identify and analyse regions of similarity and difference between genomes and to explore conservation of synteny, in the context of the entire sequences and t...
2791 days ago
- ...st genome browsers showing only reference coordinates. Instead, structural variations captured by long reads or assembled contigs often need more context to understand, including alig...
2747 days ago
- ...s and layouts. GoJS offers many advanced features for user interactivity such as drag-and-drop, copy-and-paste, in-place text editing, tooltips, context menus, automatic layouts, tem...
2715 days ago
- ...ram for high-sensitivity, genome-wide synteny; Papaya, an all-purpose alignment tool for less diverged sequences; and SLAP, a context-sensitive local aligner for d...
2709 days ago
DeCoSTAR - Detection of Co-evolution
...d relations -adjacencies- between pairs of ancestral genes or gene domains.Ancestral genes or domains are deduced from reconciled gene trees in a context of birth, speciation, duplica...2572 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...its full potential with multi-library Illumina-based projects. With more than 20 available assemblers it is hard to select the best tool. In this context we propose a tool that improv...2537 days ago
