Janggu - Deep learning for Genomics
Janggu is a python package that facilitates deep learning in the context of genomics. The package is freely available under a GPL-3.0 license. Detail tutorial at https://janggu.readthedocs.io/en/latest/ USE cases https://github.com/wkopp/janggu_usecases1153 days ago
2634 days ago
3022 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
...nd visualise genomic rearrangements. The detection is based on conditional exclusive compression, namely using a FCM (Markov model), of high context order (typically 20). For vis...2945 days ago
2811 days ago
2767 days ago
2735 days ago
2729 days ago
DeCoSTAR - Detection of Co-evolution
...d relations -adjacencies- between pairs of ancestral genes or gene domains.Ancestral genes or domains are deduced from reconciled gene trees in a context of birth, speciation, duplica...2592 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...its full potential with multi-library Illumina-based projects. With more than 20 available assemblers it is hard to select the best tool. In this context we propose a tool that improv...2557 days ago