BOL

Results for "convert"

Tags

• • LEGE@lege

  

  Multiline to singleline covert. $ awk '/^>/ {printf("%s%s\t",(N>0?"\n":""),$0);N++;next;} {printf("%s",$0);} END {printf("\n");}' < input.fa #Multi #Single #Convert #awk

  Tags: Multi, Single, Convert, awk

  1616 days ago

• • Jit@jit.aber

  

  #Convert #FASTQ to FASTA and set bases of #quality lower than 20 to N $ seqtk seq -aQ64 -q20 -n N IN.fastq > OUT.fasta

  Tags: Convert, FASTQ, quality

  983 days ago

• • Jit@jit.aber

  

  Fastq 2 fasta. $ sed -n '1~4s/^@/>/p;2~4p' test.fastq > test.fasta #fastq #fasta #convert

  Tags: fastq, fasta, convert

  2349 days ago

• • Neelam Jha@neelam

  

  Converting FASTQ to FASTA

  There are several ways you can convert fastq to fasta sequences. Some methods are listed below. Using SED sed can be used to selectively print the desired lines from a file, so if you print the first and 2rd line of every 4 lines, you get the sequence header and sequence need...

  Tags: fasta, fastq, convert, sed, awk, seqtk, bioawk, fastx, Emboss, fastq2fasta

  2299 days ago

• • Neelam Jha@neelam

  

  BAM2BED conversion bamToBed -i overall_exp_genome_rep1.bam > alignment.bed #Bed #bam #bamToBed #convert

  Tags: Bed, bam, bamToBed, convert

  2020 days ago

• • Surabhi Chaudhary@surabhi

  

  Pandoc: a universal document converter

  If you need to convert files from one markup format into another, pandoc is your swiss-army knife. Pandoc can convert almost all formats https://pandoc.org/index.html

  Tags: docs, convert, format, files

  1040 days ago

• • Surabhi Chaudhary@surabhi

  

  vcf2maf convert !

  To convert a VCF into a MAF, each variant must be mapped to only one of all possible gene transcripts/isoforms that it might affect. But even within a single isoform, a Missense_Mutation close enough to a Splice_Site, can be labeled as either in MAF format, but not as both. This selection of a si...

  Tags: maftools, maf, vcf2maf, convert, format

  864 days ago

• • LEGE@lege

  

  Tools for id conversion

  g:Convert enables to convert between various gene, protein, microarray probe and numerous other types of namespaces. We provide at least 40 types of IDs for more than 60 species. The 98 different namespaces supported for human include Ensembl, Refseq, Illumina, Entrezgene and Uniprot identif...

  Tags: convert, ids, ensemble

  344 days ago

• « Previous
• 1
• 2
• 3
• Next »