Results for "count"
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Public Databases for Bioinformatics !
...mnt/data/ globally accessible data should store common data here e.g. genomes and indexes, annotations, ENCODE data if you dont want this to count towards your quote you must c...1154 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configuration an...2181 days ago
Method in Comparative genomics !!
...for gene identification with high sensitivity and specificity. We used this test to revisit the genome of S. cerevisiae, reducing the overall gene count by 500 genes (10% of previous...2748 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei R...1141 days ago
- ...d tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one tointersect, merge, count, complement, and sh...
2642 days ago
QuorUM: An Error Corrector for Illumina Reads
...error in some read at every base in the genome. These errors make handling the data more complicated because they result in a large number of low-count erroneous k-mers in the...2385 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...f reads.fq reads.paf.gz > reads.gfa Convert GFA to FASTA: awk '/^S/{print ">"$2"\n"$3}' reads.gfa | fold > reads.fa And then count how many contigs: grep "&g...2366 days ago
Seal: SEquence ALignment evaluation suite
...reference genome from one or more FASTA files. Alternatively, generating an artificial reference genome based on input parameters (length, repeat count, repeat length, repeat variab...2329 days ago
Genome assembly stats plotting
...g Scaffold/contig N50 and N90Assembly base composition, in particular percentage GC and percentage Ns CEGMA completeness Scaffold/contig length/count distribution assembly-stat...2273 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts. The following tools are cur...GC Processor. Creates a matrix of the number of K-mers found given a GC count and a K-mer count. comp: K-m...1996 days ago
