Results for "count"
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Comment on "Tools for Differential expression analysis"
...a negative binomial distribution to model the count data and provides methods for...t uses a generalized linear model to model the count data and provides methods for...he negative binomial distribution to model the count data and provides methods for...435 days ago
Comment on "Sibelia: A comparative genomics tool"
..., then the are three instances of this block in the input sequence 2. Count -- number of synteny blocks w...e Here is an example of such table from a report file. | Degree | Count | Total | Seq 1 | Seq 2...1299 days ago
Comment on "Perl script to count number of Ns in a multifasta file !"
If you want to count all 'N' in miltifasta file. (base) ? output_2_test git:(master) ? more scaffolds.fasta | grep -Ho N * | uniq -c ...1578 days ago
Comment on "Estimate Genome Size"
# count k-mers (see jellyfish documentation for options...-dc reads1.fastq.gz reads2.fastq.gz | jellyfish count -m 31 -o fastq.counts -C -s 10000000000 -U 500 -t...pdf graph of the histogram jellyplot.pl fastq.counts_0.histo # look at fastq.cou...1912 days ago
- ...ed by default] --perc_identity <value>, --pi <value> threshold for identity [default : 85] -t <value>, --threads <value> count of threads for parallel execu...
2137 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...s.fq reads.paf.gz > reads.gfa Convert GFA to FASTA: awk '/^S/{print ">"$2"\n"$3}' reads.gfa | fold > reads.fa And then count how many contigs: grep "...2190 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...nment has error rate (X+I+D) larger than this, it won't be taken into account. If >= 1.0, this filter is...t has indel error rate (I+D) larger than this, it won't be taken into account. If >= 1.0, this filter is...2307 days ago
Comment on "RPKM normalization - Perl"
Usage: perl rpkm_script_beta.pl sample_count_test.count 2:9 28 > sample_count_test.rpkm...me, column 2 to 9 samples with corresponding counts and column 28 is length of e...ps://github.com/santhilalsubhash/rpkm_rnaseq_count Sample input: https://githu...2886 days ago
