String graph based genome assembly software and tools !
...transitive reduction of the string overlap graph, the use of (generalized) edge multiplicity statistics for more accurate estimation of read copy counts, and the improved use of mate...2332 days ago
BBTools for bioinformatician !
...sition 19, zero-based). Code: $ kmercountexact.sh in=trimmed.fq out=counts.txt fastadump=f mincount=10 k=20 rcomp=f This will generate a file containing the counts of all 20-mers that occurred...2274 days ago
Perl one-liner for beginners !
...our line to be called in a loop. Prints $_ at the end This counts the number of quotation marks...erl">perl -lane 'print $F[1] unless $F[1] =~ m/[0-9]/' wordCounts.txt...1385 days ago