Results for "coverage"
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Simons Genome Diversity Project
Complete genome sequences from more than one hundred diverse human populations All genomes in the dataset were sequenced to at least 30x coverage using Illumina technology. The sequen...1099 days ago
- ...uracy of Centurion in identifying known centromere locations from high coverage Hi-C data of budding yeast an...aria parasite. We then use two metagenomic samples with relatively low coverage Hi-C data to infer centromere...
3012 days ago
REAPR: a universal tool for genome assembly evaluation
...are requires as input an assembly in FASTA format and paired reads mapped to the assembly in a BAM file. Mapping information such as the fragment coverage and insert size distribution...2958 days ago
- ...methods. This framework is comprehensive, and integrates read quality, mate pair orientation and insert length (for paired-end reads), sequencing coverage, read alignment and k-mer fre...
2938 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst other...2914 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...fic BioSciences SMRT. Indeed, MOSAIK was the only aligner to provide consistent mappings for all the generated data (sequencing technologies, low-coverage and exome) in the 1000 Genome...2914 days ago
- ...blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visuali...blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visuali...rasites using taxon-annotated GC-coverage plots. Sujai Kumar, Mart...ate and collate GC content, read coverage and taxon annotation for the...
2890 days ago
- ...sembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultaneous display of GC content, coverage, and taxonomic annotation for...
2889 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instruction...by a similar calculator written by James Hadfield. Coverage is calculated as C=LN/G and r...2173 days ago
- ...that should hold true for a correct assembly (e.g., mate-pairs are aligned at the correct distance from each other in the assembly, the depth of coverage is fairly uniform along conti...
2789 days ago
