Estimate Genome Size with Jellyfish and R
...Base quality value. Version 2.2.3 of Jellyfish uses the “Phred” score, where "?" = 30 jellyfish histo -o 19mer_out.histo 19mer_out #Plot dataframe19...2244 days ago
Perl script to find palindromic regions in DNA sequences
use strict; use warnings; my $pp = qr/(?: (\w) (?1) \g{-1} | \w? )/ix; my $filename = $ARGV[0]; open(my $fh, '2152 days ago
Perl script to check fastq reads qualities !
...join("\t", $n, $slen, $qlen), "\n"; } #print join("\t", $n, $slen, $qlen), "\n"; __END__ my @aux = undef; # this is for keeping intermediate data while (my ($name, $seq, $q...2152 days ago
Installing Busco version 4.0.6
...nda-forge busco=4.0.6 Collecting package metadata (repodata.json): done Solving environm...64::perl-cpan-meta-yaml-0.018-pl526_0 perl-data-dumper bioconda/linux-64::p...ule-metad~ bioconda/linux-64::perl-module-metadata-1.000036-pl526_0 perl-para...1451 days ago
2149 days ago
Biological Sequence handling with Perl !
...}; # clone operation } else { croak "Doesn't look like sequence data" unless $sequence=~/^[gactnu\s]+$/i; $self->{'data'} = $self->_canonicalize($seq...2179 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name her...2138 days ago
2124 days ago
Install Parrot Virtual Machine !
..................skipped. gen::makefiles - Generate makefiles and other build files...........done. gen::config_pm - Record configuration data for later retrieval......done...1535 days ago
1514 days ago