2097 days ago
Perl script to find palindromic pattern !
...$ed\t$sLen\t$val\n"; printf "%s%s at %d\n", ' 'x($p1-$pals), substr( $in, $p1-$pals, ($pals+1)*2 ), $p1-$pals; } } __DATA__ AGAGGTCAGTCTGCATCGTATCGATC...2097 days ago
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2002 days ago
CollectGcBiasMetrics.jar will generate a GC bias plot for each contig
...;print $2}' ); do samtools view -b aln-pe.mapped.sorted.bam $i > aln-pe.mapped.sorted.$i.bam; java -Xmx2g -jar $(which CollectGcBiasMetrics.jar) R=data/Cdiff078.fa I=aln-pe.mapped.s...2002 days ago
1551 days ago
Perl script to remove duplicated lines !
...t line: $_ -- next line: $next_line$/"; print $_ if $_ ne $next_line; } continue { $_ = $next_line; } print $_ if eof; } __DATA__ apple apple plum vinega...1558 days ago
Bash script to download SRA file !
...se the sratoolkit to directly pull the sequence data (in paired FASTQ format) from...the SRA toolkit. It allows directly downloading data from a particular sequencing...tq-dump --split-files SRR1770413 #SRA stores data in a particular compressed fo...1557 days ago