Results for "data"

Bio-Scripts

  • Running REAPR !

    ...smaltmap -u 5 -n 25 WadinetaGapFilled.gapfilled.iteration1.fa /home/urbe/DATA/OriginalReads/ANature/GC02756..._and_Habrotrocha.160226.HiSeq2000.FCB.lane1.gcap_dev.R1.fastq /home/urbe/DATA/OriginalReads/ANature/GC02756...

    2097 days ago

  • Perl script to find palindromic pattern !

    ...$ed\t$sLen\t$val\n"; printf "%s%s at %d\n", ' 'x($p1-$pals), substr( $in, $p1-$pals, ($pals+1)*2 ), $p1-$pals; } } __DATA__ AGAGGTCAGTCTGCATCGTATCGATC...

    2097 days ago

  • Downloading GATK !

    ...fter the -- will be passed to dataproc --clust...germline samples given counts data GermlineCNVCaller...Checks that all data in the input files appear to...concordance between genotype data of one samples in each of two...

    2073 days ago

  • Update zsh on Ubuntu !

    ...s/ember-cli/ember-cli.plugin.zsh | 3 +- plugins/emoji/README.md | 6 +- plugins/emoji/emoji-data.txt...

    2072 days ago

  • Test bp-assembly !

    ...ocal/cache' make -j -f /home/users/j/n/jnarayan/FALCON-examples/git-sym.makefile 'greg200k-sv2.2' curl -L https://downloads.pacbcloud.com/public/data/git-sym/greg200k-sv2.2.tar |...

    2032 days ago

  • Collecting arguments with R

    #! /usr/bin/Rscript ## Collect arguments args

    2002 days ago

  • CollectGcBiasMetrics.jar will generate a GC bias plot for each contig

    ...;print $2}' ); do samtools view -b aln-pe.mapped.sorted.bam $i > aln-pe.mapped.sorted.$i.bam; java -Xmx2g -jar $(which CollectGcBiasMetrics.jar) R=data/Cdiff078.fa I=aln-pe.mapped.s...

    2002 days ago

  • Install NPM !

    ...node-forever-agent node-form-data node-fs.realpath node-fstr...onic/universe amd64 node-form-data all 0.1.0-1 [6,412 B]...amd64 node-normalize-package-data all 2.3.5-2 [10.6 kB]...ackage node-normalize-package-data. Preparing to unpack .../66-...

    1551 days ago

  • Perl script to remove duplicated lines !

    ...t line: $_ -- next line: $next_line$/"; print $_ if $_ ne $next_line; } continue { $_ = $next_line; } print $_ if eof; } __DATA__ apple apple plum vinega...

    1558 days ago

  • Bash script to download SRA file !

    ...se the sratoolkit to directly pull the sequence data (in paired FASTQ format) from...the SRA toolkit. It allows directly downloading data from a particular sequencing...tq-dump --split-files SRR1770413 #SRA stores data in a particular compressed fo...

    1557 days ago