Results for "data compression"
Bio-Scripts
set -e echo "Running reapr version 1.0.18 pipeline:" echo "/home/urbe/Tools/Reapr_1...dinetaGapFilled.gapfilled.iteration1.fa /home/urbe/DATA/OriginalReads/ANature/GC02756...6.HiSeq2000.FCB.lane1.gcap_dev.R1.fastq /home/urbe/DATA/Origin...2093 days ago
Perl script to find palindromic pattern !
#!/usr/bin/perl use strict; use warnings; use strict; my %invert; @invert{ qw[ A C G T ] } = qw[ T G C A ];..., substr( $in, $p1-$pals, ($pals+1)*2 ), $p1-$pals; } } __DATA__ AGA...2093 days ago
- ..._write_tribble=false -Dsamjdk.compression_level=1 -jar /media/ji...germline samples given counts data GermlineCNVCaller...Checks that all data in the input files appear to...concordance between genotype data of one samples in each of two VCFs -...
2069 days ago
- ➜ upgrade_oh_my_zsh Updating Oh My Zsh remote: Counting objects: 484, done. remote: Compressing objects: 100%...moji/README.md | 6 +- plugins/emoji/emoji-data.txt...
2069 days ago
- (denovo_asm) [jnarayan@hmem00 ~]$ git clone https://github.com/cdunn2001/git-sym.git fatal: destination path 'g...sym.makefile 'greg200k-sv2.2' curl -L https://downloads.pacbcloud.com/public/data/git-sy...
2028 days ago
- #! /usr/bin/Rscript ## Collect arguments args
1998 days ago
CollectGcBiasMetrics.jar will generate a GC bias plot for each contig
samtools index aln-pe.mapped.sorted.bam for i in $(samtools view -H aln-pe.mapped.sorted.bam | awk -F"\t" '/@...pe.mapped.sorted.$i.bam; java -Xmx2g -jar $(which CollectGcBiasMetrics.jar) R=data/Cdiff0...1998 days ago
- $ sudo apt install npm Reading package lists... Done Building...node-forever-agent node-form-data node-fs.realpath node-fstr...onic/universe amd64 node-form-data all 0.1.0-1 [6,412 B]...amd64 node-normalize-package-data all 2.3.5-2 [10.6 kB]...ackage node-normalize-package-data. Prep...
1547 days ago
Perl script to remove duplicated lines !
#!/usr/bin/perl use strict; use warnings; { $_ = ; my $next_line; while( $next_line = ) {...ine; } continue { $_ = $next_line; } print $_ if eof; } __DATA__ app...1554 days ago
Bash script to download SRA file !
#We can use the sratoolkit to directly pull the sequence data (in paired FASTQ format) from the archive. fas...he SRA toolkit. It allows directly downloading data from a particular sequencing...q-dump --split-files SRR1770413 #SRA stores data in a p...1553 days ago
