Results for "data visualization"
Bio-Scripts
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently compile and execute bytecode for dynamic languages jit@j...other build files...........done. gen::config_pm - Record configuration data for late...1535 days ago
Long reads mapper bash script !
#!/bin/bash #only for LONG READS mapping #USAGE:...s a bash scrip to map your long reads and make it visualization ready !" #Location of the...rameter !" fi echo "Getting files ready for visualization !" $samtools view -Sb $fileN...2121 days ago
- # list sample names & download URLs. sample_links = {"ERR458493": "https://osf.io/5d...ES=sample_links.keys() # download yeast rna-seq data from Schurch et al, 2016 stud...nload_all: input: expand("rnaseq/raw_data/{sample}...
1514 days ago
- set -e echo "Running reapr version 1.0.18 pipeline:" echo "/home/urbe/Tools/Reapr_1...dinetaGapFilled.gapfilled.iteration1.fa /home/urbe/DATA/OriginalReads/ANature/GC02756...6.HiSeq2000.FCB.lane1.gcap_dev.R1.fastq /home/urbe/DATA/Original...
2097 days ago
Perl script to find palindromic pattern !
#!/usr/bin/perl use strict; use warnings; use strict; my %invert; @invert{ qw[ A C G T ] } = qw[ T G C A ];..., substr( $in, $p1-$pals, ($pals+1)*2 ), $p1-$pals; } } __DATA__ AGAGG...2097 days ago
- jitendra@jitendra-UNLOCK-INSTALL[SNP] wget https://github.com/br...fter the -- will be passed to dataproc --clust...germline samples given counts data GermlineCNVCaller...Checks that all data in the input files appear to...concordance between genotype data of one s...
2074 days ago
- ➜ upgrade_oh_my_zsh Updating Oh My Zsh remote: Counting objects: 484, done. remote: Compressing objects: 100%...moji/README.md | 6 +- plugins/emoji/emoji-data.txt...
2073 days ago
- (denovo_asm) [jnarayan@hmem00 ~]$ git clone https://github.com/cdunn2001/git-sym.git fatal: destination path 'g...sym.makefile 'greg200k-sv2.2' curl -L https://downloads.pacbcloud.com/public/data/git-sym/...
2032 days ago
- #! /usr/bin/Rscript ## Collect arguments args
2002 days ago
CollectGcBiasMetrics.jar will generate a GC bias plot for each contig
samtools index aln-pe.mapped.sorted.bam for i in $(samtools view -H aln-pe.mapped.sorted.bam | awk -F"\t" '/@...pe.mapped.sorted.$i.bam; java -Xmx2g -jar $(which CollectGcBiasMetrics.jar) R=data/Cdiff078...2002 days ago
