Results for "de novo assembly"
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Short-read assembly using Spades !
If we only had Illumina reads, we could also assemble these using the tool Spades....mina_R1.fastq.gz -2 illumina_R2.fastq.gz --careful --cov-cutoff auto -o spades_assembly_all_illumina -1 i...841 days ago
Bioinformatics tools for genome assembly !
...d sequencing data. SOAPdenovo: A de Bruijn graph-based asse...karyotic genomes. SMARTdenovo: An assembler designed for long r...for circular bacterial genome assembly. wtdbg2: A de Bruijn gra...constantly evolving, and new assembly tools may have emerged since...302 days ago
Mitochondrial genome assembly tools !
...making it an ideal target for assembly. Here are some commonly used mitochondrial genome assembly tools: MitoFinder:...ows for reference-based or de novo assembly. NOVOPlasty: NOVOPlasty is a user-frien...signed for chloroplast genome assembly, GetOrganelle can also be use...258 days ago
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