Results for "de-novo"
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Bioinformatics Companies in India
Following are the list of top 30 bioinformatics companies in India. The companies name order does not follow any specific pattern. 1. Accelrys Software Solution Pvt Lt...3922 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant...3776 days ago
Commercial and public next-gen-seq (NGS) software
...published in Genome Research). Uses a de Bruijn graph approach. MIRA2 - MIRA (Mimicking Intelligent Read Assembly) is able to perform true hybrid de-novo assemblies using reads gather...3515 days ago
Software packages for next gen sequence analysis
...blished in Genome Research). Uses a de Bruijn graph approach. * MIRA2 - MIRA (Mimicking Intelligent Read Assembly) is able to perform true hybrid de-novo assemblies using reads gather...3239 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...le generated by DFExtract and a config file Output: .results file, .Gtype, LOG.txt, also generates visualization DeNovoGear Description: de-novo variant calling and interpret...2905 days ago
Genome Assembly Tools and Software - PART1 !!
...content. FinisherSC 2.0 – A Repeat-aware tool for upgrading de-novo Assembly using Long Reads FinisherSC is a repeat-aware and scalable tool for upgrading de-novo assembly using long reads....2682 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination of read compatibility with targets) Software (C++)...2368 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outpu...2327 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Academic https://academic.oup.com/bioinformatics/article/30/18/2559/2475628 Refe...2238 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, for example "GapFiller: a de novo assembly approach to fill the gap within paired reads" or "Tow...2162 days ago
