3940 days ago
3935 days ago
Bioinformatics Companies in India
Following are the list of top 30 bioinformatics companies in India. The companies name order does not follow any specific pattern. 1. Accelrys Software Solution Pvt Ltd...3919 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ilitates improved mapping and assembly of GC-biased genomes. Kozarew...2011. PubMedCentral De novo assembly Velvet: algorithms for de n...essment of de novo short read assembly methods. Earl et al, Genome R...aired-end RAD-seq for de novo assembly and marker design without ava...3772 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and shared (in mod...e, for storing large nucleotide sequence alignments Staden Package Sequence assembly, editing and analysis, primar...3750 days ago
Commercial and public next-gen-seq (NGS) software
...ource/Unix. MAQ - Mapping and Assembly with Qualities (renamed from...e novo Align/Assemble ABySS - Assembly By Short Sequences. ABySS is...s able to perform true hybrid de-novo assemblies using reads gathere...genome (without any ab initio assembly of the reads), and all the po...3512 days ago
Software packages for next gen sequence analysis
...rce/Unix. * MAQ - Mapping and Assembly with Qualities (renamed from...novo Align/Assemble * ABySS - Assembly By Short Sequences. ABySS is...s able to perform true hybrid de-novo assemblies using reads gathere...genome (without any ab initio assembly of the reads), and all the po...3236 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ive NGS software pipeline for assembly, alignment, variant calling a...reference genome or de novo assembly not needed Output: LoFr...DeNovoGear Description: de-novo variant calling and interpreta...ome; performs localized micro-assembly of specific regions of intere...2902 days ago
Genome Assembly Tools and Software - PART1 !!
...– de novo Transcriptome Assembly pipeline from stranded RNA-Se...Sequence Assembler ABySS (Assembly By Short Sequences) is a de n...peat-aware tool for upgrading de-novo Assembly using Long Reads F...d scalable tool for upgrading de-novo assembly using long reads....2679 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification fr...Software (C) https://github.com/lh3/minimap Assembly De novo genome assembly MHAP Produces highly contin...uences and the distances between them based on assembly using de Bruijn graphs and Br...2364 days ago