2952 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using com...2952 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads...an be used in any stage of an assembly pipeline to automatically bre...s and flag other errors in an assembly for manual inspection. It rep...der to score each base of the assembly. http://www.sanger.ac.uk/sci...2951 days ago
2940 days ago
2932 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is important to know before diving head first into more advanced analysis tools such a...2932 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molec...level, feel free to use and report issues encountered. Canu is a hierachical assembly pipeline which runs in four s...2915 days ago
2918 days ago
2915 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (...ims to assist (amongst others) in quality control of de novo genome assembly or identification of structur...2907 days ago