Results for "de-novo assembly"
Bookmarks
Tools for making blobplots or Taxon-Annotate...to visualise the contents of genome assembly data sets as a QC step Blaxt...to visualise the contents of genome assembly data sets as a QC step. This...in the paper to create a preliminary assembly, and to create and collate GC...2884 days ago
- The Genome Assembly Evaluation Metrics and&...p;Reporting (GAEMR) package is an assembly analysis framework composed a...leteness -- how many pieces in an assembly composed of, how well those p...ture of the condition of a genome assembly.
2883 days ago
- DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by select...
2875 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than...2862 days ago
VAGUE:Velvet Assembler Graphical Front End
VAGUE is a vague acronym for "Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo assembler. The command line version of Velvet can be...2628 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36)&nb...
2800 days ago
- This tutorial includes resources for learning more about PacBio data and bioinformati...nars) Bioinformatics Training Slides Specialized Applications: De Novo Assembly Transcriptome analysis Base...
2628 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the o...
2820 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1227 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo...
2818 days ago
