Results for "de-novo assembly"

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  • Short-read assembly using Spades !

    If we only had Illumina reads, we could also assemble these using the tool Spades. Y...ina_R1.fastq.gz -2 illumina_R2.fastq.gz --careful --cov-cutoff auto -o spades_assembly_all_illumina -1 i...

    817 days ago

  • Bioinformatics tools for genome assembly !

    There are numerous genome assembly tools available, each with its st...a list of some widely used genome assembly tools as of my last update in...ads for circular bacterial genome assembly. wtdbg2: A de Bruijn gra...s is constantly evolving, and new assembly tools may have emerged since...

    278 days ago

  • Mitochondrial genome assembly tools !

    ...making it an ideal target for assembly. Here are some commonly used mitochondrial genome assembly tools: MitoFinder: Mitofinde...e and iteratively refines the assembly using the read data. MITOS:...signed for chloroplast genome assembly, GetOrganelle can also be use...

    235 days ago