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Results for "delta"

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• • Surabhi Chaudhary@surabhi

  

  ABACAS

  ...eudomolecule taking overlaping contigs and gaps in to account. MUMmer's alignment generating programs, Nucmer and Promer are used followed by the 'delta-filter' utility function. Use...

  2651 days ago

• • Jit@jit.aber

  

  Delta: a new Web-based 3D genome visualization and analysis platform

  Delta is an integrative visualization...hysical architecture of genomes. Delta takes Hi-C or ChIA-PET c...nsus 3D structure of the genome. Deltafeatures a highly interactive...puts. https://github.com/zhangzhwlab/delta

  2344 days ago

• • Jit@jit.aber

  

  Dot, an interactive viewer for genome-genome comparison

  ...MUMmer’s nucmer aligner the most commonly used software method for aligning genome assemblies. A quick script called DotPrep.py converts the delta file to a more streamlined co...

  2319 days ago

• • Jit@jit.aber

  

  assemblytics: delta file to analyze alignments of an assembly to another assembly or a reference genome

  ...00 REFERENCE.fa ASSEMBLY.fa -prefix OUT Consult the MUMmer manual if you encounter problems Optional: Gzip the delta file to speed up upload (usually 2-4X faster) $ gzip OUT.delta Then use the OUT.delta.gz fi...

  2168 days ago

• • BioStar@biostar

  

  STRUM: structure-based prediction of protein stability changes upon single-point mutation

  STRUM is a method for predicting the fold stability change (ΔΔG) of protein molecules upon single-point nsSNP mutations. STRUM adopts a gradient boosting regression approch t...

  2080 days ago

• • Jit@jit.aber

  

  BUSCO datasets !

  ...agia_odb10.2020-03-06.tar.gz 16-Oct-2020 13:20 18M delta-epsilon-subdivisions_odb10.2020-03-06.tar.gz 16-Oct-2020 13:19 6M deltaproteobacteria_odb10.2020-03-0...

  1223 days ago