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...omic data sets by combining the advantages of the k -NN approach with a smoothing kernel function. TACOA can be easily installed and run on a desktop computer, therefore allowing...2193 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
CSBFinder is a standalone Desktop java application with a graphical user interface, that can also be executed via command line. CSBFinder implements a novel methodology for the dis...2030 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
...d for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read...1956 days ago
Roary: the Pan Genome Pipeline
...me pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka (Seemann, 2014)) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets w...1941 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
...gned for RNA-seq reads, and is more time and memory efficient. With a 5 GB memory footprint for 100 million reads, it can be run on virtually any desktop or server. The software is av...1562 days ago
CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes
...o current state of the art methods. For smaller vertebrate genomes (~1 Gbp) chromosome scale assemblies can be achieved within 12h on high-end Desktop computers (Intel i7, 12 CPU t...1163 days ago
- Flutter is Google’s UI toolkit for building beautiful, natively compiled applications for mobile, web, and desktop from a single codebase.
1203 days ago
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