Results for "detect"
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A program to detect recombination hotspots using population genetic data. More at https://github.com/auton1/LDhot3013 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
...re is currently alpha level, feel free to use and report issues encountered. Canu is a hierachical assembly pipeline which runs in four steps: Detect overlaps in high-noise sequen...2913 days ago
MEDEA: Comparative Genomic Visualization with Adobe Flash
...grows larger, the need to understand, compare, and contrast the data becomes increasingly important. Using the power of the human visual system to detect trends and spot outliers is n...2929 days ago
YASS :: genomic similarity search tool
...e most of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS uses seeds to detect potential similarity regions,...2923 days ago
- segemehl is a software to map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furth...
2915 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...ng genes, non-coding genes, or neutral sequences. Satsuma does not require any pre-processing, such as repeat masking, since it will automatically detect ambiguous mappings. Satsuma...2913 days ago
- ...tructural variations using sequencing data. The methods are designed to detect shared variation using data f...Genome STRiP looks both across and within a set of sequenced genomes to detect variation. The methods are ad...
2797 days ago
- ...b and fastacmd), PAML (including codeml and yn00) and KaKs_Calculator (including 10 substitution rate estimation methods). gKaKs can automatically detect and eliminate frameshift muta...
2804 days ago
- ..., several computational methods are available and are widely applied to detect numerical copy number aberrat...es. However, there is lack of computational methods that systematically detect structural chromosomal aberra...
2152 days ago
- ...- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary...ns with the direction of discordant read pairs. PRISM_CTX is a tool for detecting inter-chromosome trans-loc...
2701 days ago
